Click any of the panels below for example job submission scripts!

  flowchart TD
      A[Amato Lab Qiime2 Workflow]
      A --> B{1. Preprocessing}
      B --> |Step 1| C(Example Job: Summary Info)
      click C "./ExampleJobs/PreprocessingExamples/1_qiime_summaryinfo.html"
      C --> |Step 2| D(Example Job: Dada2)
      click D "./ExampleJobs/PreprocessingExamples/2_dada2.html"
      D --> |Step 3| E(Example Job: Feature/Phylo/Filter)
      click E "./ExampleJobs/PreprocessingExamples/3_feature_phylo_check.html"
      A --> F{2. Analysis}
      F --> |Step 1| G(Example Job: Quality Check)
      click G "./ExampleJobs/MainAnalysisExamples/1_qualcheck.html"
      G --> |Step 2| H(Example Job: Alpha Diversity)
      click H "./ExampleJobs/MainAnalysisExamples/2_alpha_diversity.html"
      H --> |Step 3| I(Example Job: Beta Diversity)
      click I "./ExampleJobs/MainAnalysisExamples/3_beta_diversity.html"
      I --> |Step 4| J(Example Job: Relative Abundance)
      click J "./ExampleJobs/MainAnalysisExamples/4_rel_abundance.html"
      J --> |Step 5| K(Example Job: Core Microbiome)
      click K "./ExampleJobs/MainAnalysisExamples/5_core_microbiome.html"
      K --> |Step 6| L(Example Job: Supervised Learning)
      click L "./ExampleJobs/MainAnalysisExamples/6_SupLearn_RandForest.html"